IL_9SPF_135
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SPF_135 not in the Motif Atlas
- Homologous match to IL_8GLP_159
- Geometric discrepancy: 0.0288
- The information below is about IL_8GLP_159
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34443.2
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9SPF|1|L5|C|4596
9SPF|1|L5|U|4597
9SPF|1|L5|C|4598
9SPF|1|L5|A|4599
9SPF|1|L5|G|4600
9SPF|1|L5|U|4601
9SPF|1|L5|A|4602
9SPF|1|L5|C|4603
*
9SPF|1|L5|G|4608
9SPF|1|L5|G|4609
9SPF|1|L5|A|4610
9SPF|1|L5|A|4611
9SPF|1|L5|C|4612
9SPF|1|L5|C|4613
9SPF|1|L5|G|4614
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LH
- 60S ribosomal protein L9
- Chain LV
- 60S ribosomal protein L23
- Chain Lm
- Ubiquitin-ribosomal protein eL40 fusion protein
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