IL_9SPI_171
3D structure
- PDB id
- 9SPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9SPI|1|S2|U|361, 9SPI|1|S2|C|399, 9SPI|1|S2|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPI|1|S2|U|359
9SPI|1|S2|A|360
9SPI|1|S2|U|361
9SPI|1|S2|C|362
9SPI|1|S2|A|363
9SPI|1|S2|A|364
*
9SPI|1|S2|U|396
9SPI|1|S2|G|397
9SPI|1|S2|A|398
9SPI|1|S2|C|399
9SPI|1|S2|C|400
9SPI|1|S2|A|401
9SPI|1|S2|C|402
9SPI|1|S2|G|403
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
- Chain SX
- 40S ribosomal protein S23
Coloring options: