IL_9SRA_004
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGUAAG*CUUAG
- Length
- 11 nucleotides
- Bulged bases
- 9SRA|1|1|U|69
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_004 not in the Motif Atlas
- Geometric match to IL_9PN5_129
- Geometric discrepancy: 0.0738
- The information below is about IL_9PN5_129
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48489.3
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
9SRA|1|1|U|40
9SRA|1|1|G|41
9SRA|1|1|U|42
9SRA|1|1|A|43
9SRA|1|1|A|44
9SRA|1|1|G|45
*
9SRA|1|1|C|67
9SRA|1|1|U|68
9SRA|1|1|U|69
9SRA|1|1|A|70
9SRA|1|1|G|71
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BV
- Large ribosomal subunit protein eL24
Coloring options: