IL_9SRA_005
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAG*(4AC)GAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_005 not in the Motif Atlas
- Geometric match to IL_9E6Q_104
- Geometric discrepancy: 0.1814
- The information below is about IL_9E6Q_104
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
9SRA|1|1|G|49
9SRA|1|1|A|50
9SRA|1|1|A|51
9SRA|1|1|G|52
*
9SRA|1|1|4AC|60
9SRA|1|1|G|61
9SRA|1|1|A|62
9SRA|1|1|C|63
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain AJ
- 30S ribosomal protein S8e
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain BV
- Large ribosomal subunit protein eL24
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