IL_9SRA_007
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_007 not in the Motif Atlas
- Homologous match to IL_4V9F_001
- Geometric discrepancy: 0.1192
- The information below is about IL_4V9F_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.3
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SRA|1|1|G|138
9SRA|1|1|U|139
9SRA|1|1|G|140
9SRA|1|1|G|141
9SRA|1|1|A|142
9SRA|1|1|U|143
9SRA|1|1|G|144
*
9SRA|1|1|C|662
9SRA|1|1|U|663
9SRA|1|1|G|664
9SRA|1|1|A|665
9SRA|1|1|A|666
9SRA|1|1|A|667
9SRA|1|1|C|668
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BS
- Large ribosomal subunit protein uL22
- Chain Bb
- Large ribosomal subunit protein eL32
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