IL_9SRA_008

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9SRA|1|1|A|597

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_008 not in the Motif Atlas

Homologous match to IL_4V9F_002

Geometric discrepancy: 0.0984

The information below is about IL_4V9F_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9SRA|1|1|G|150
9SRA|1|1|C|151
*
9SRA|1|1|G|596
9SRA|1|1|A|597
9SRA|1|1|C|598

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BL

Large ribosomal subunit protein uL15

Chain BU

Large ribosomal subunit protein uL24