IL_9SRA_011
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCGAG*(4AC)GUCGAAC
- Length
- 13 nucleotides
- Bulged bases
- 9SRA|1|1|C|214
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_011 not in the Motif Atlas
- Homologous match to IL_4V9F_004
- Geometric discrepancy: 0.1973
- The information below is about IL_4V9F_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9SRA|1|1|G|195
9SRA|1|1|C|196
9SRA|1|1|G|197
9SRA|1|1|A|198
9SRA|1|1|G|199
*
9SRA|1|1|4AC|211
9SRA|1|1|G|212
9SRA|1|1|U|213
9SRA|1|1|C|214
9SRA|1|1|G|215
9SRA|1|1|A|216
9SRA|1|1|A|217
9SRA|1|1|C|218
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BU
- Large ribosomal subunit protein uL24
- Chain BW
- Large ribosomal subunit protein uL29
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