IL_9SRA_057

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GC*GAUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_057 not in the Motif Atlas

Homologous match to IL_4V9F_045

Geometric discrepancy: 0.1286

The information below is about IL_4V9F_045

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_72211.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9SRA|1|1|G|1420
9SRA|1|1|C|1421
*
9SRA|1|1|G|1440
9SRA|1|1|A|1441
9SRA|1|1|U|1442
9SRA|1|1|C|1443

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain B6

30S ribosomal protein S24e

Chain BY

Large ribosomal subunit protein uL30

Chain Bb

Large ribosomal subunit protein eL32