IL_9SRA_058

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGU*AUCG

Length

7 nucleotides

Bulged bases

9SRA|1|1|U|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_058 not in the Motif Atlas

Homologous match to IL_4V9F_046

Geometric discrepancy: 0.1516

The information below is about IL_4V9F_046

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9SRA|1|1|C|1455
9SRA|1|1|G|1456
9SRA|1|1|U|1457
*
9SRA|1|1|A|1505
9SRA|1|1|U|1506
9SRA|1|1|C|1507
9SRA|1|1|G|1508

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain B6

30S ribosomal protein S24e

Chain BD

Large ribosomal subunit protein uL4

Chain BL

Large ribosomal subunit protein uL15

Chain Bb

Large ribosomal subunit protein eL32