IL_9SRA_060
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_060 not in the Motif Atlas
- Homologous match to IL_4V9F_049
- Geometric discrepancy: 0.149
- The information below is about IL_4V9F_049
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9SRA|1|1|G|1521
9SRA|1|1|G|1522
9SRA|1|1|A|1523
9SRA|1|1|G|1524
9SRA|1|1|U|1525
9SRA|1|1|A|1526
9SRA|1|1|G|1527
*
9SRA|1|1|C|2252
9SRA|1|1|G|2253
9SRA|1|1|A|2254
9SRA|1|1|A|2255
9SRA|1|1|A|2256
9SRA|1|1|C|2257
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BS
- Large ribosomal subunit protein uL22
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