IL_9SRA_066
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAG*CGAUC
- Length
- 9 nucleotides
- Bulged bases
- 9SRA|1|1|U|1862
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_066 not in the Motif Atlas
- Geometric match to IL_2ZY6_001
- Geometric discrepancy: 0.1423
- The information below is about IL_2ZY6_001
- Detailed Annotation
- tSH-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_74317.1
- Basepair signature
- cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
9SRA|1|1|G|1674
9SRA|1|1|U|1675
9SRA|1|1|A|1676
9SRA|1|1|G|1677
*
9SRA|1|1|C|1859
9SRA|1|1|G|1860
9SRA|1|1|A|1861
9SRA|1|1|U|1862
9SRA|1|1|C|1863
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain Bd
- Large ribosomal subunit protein eL34
Coloring options: