IL_9SRA_067

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUAG*CGAUC

Length

9 nucleotides

Bulged bases

9SRA|1|1|U|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_067 not in the Motif Atlas

Geometric match to IL_9E6Q_057

Geometric discrepancy: 0.0878

The information below is about IL_9E6Q_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9SRA|1|1|G|1714
9SRA|1|1|U|1715
9SRA|1|1|A|1716
9SRA|1|1|G|1717
*
9SRA|1|1|C|1822
9SRA|1|1|G|1823
9SRA|1|1|A|1824
9SRA|1|1|U|1825
9SRA|1|1|C|1826

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BQ

Large ribosomal subunit protein eL19

Chain Bd

Large ribosomal subunit protein eL34