IL_9SRA_073

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_073 not in the Motif Atlas

Geometric match to IL_8OI5_078

Geometric discrepancy: 0.0621

The information below is about IL_8OI5_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74641.4

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

9SRA|1|1|G|1942
9SRA|1|1|G|1943
9SRA|1|1|A|1944
9SRA|1|1|A|1945
*
9SRA|1|1|U|2234
9SRA|1|1|C|2235

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BJ

Large ribosomal subunit protein uL14