IL_9SRA_081
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUAUG*CAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_081 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.3621
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_24466.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 9
Unit IDs
9SRA|1|1|G|2102
9SRA|1|1|U|2103
9SRA|1|1|A|2104
9SRA|1|1|U|2105
9SRA|1|1|G|2106
*
9SRA|1|1|C|2133
9SRA|1|1|A|2134
9SRA|1|1|C|2135
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BB
- Large ribosomal subunit protein uL2
- Chain H
- Dehydrogenase
Coloring options: