IL_9SRA_095
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAG*(4AC)GUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_095 not in the Motif Atlas
- Homologous match to IL_4V9F_080
- Geometric discrepancy: 0.2707
- The information below is about IL_4V9F_080
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.3
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 11
Unit IDs
9SRA|1|1|C|2528
9SRA|1|1|A|2529
9SRA|1|1|G|2530
*
9SRA|1|1|4AC|2548
9SRA|1|1|G|2549
9SRA|1|1|U|2550
9SRA|1|1|A|2551
9SRA|1|1|G|2552
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain BE
- Large ribosomal subunit protein uL5
- Chain BO
- Large ribosomal subunit protein uL18
- Chain BR
- Large ribosomal subunit protein eL21
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