IL_9SRA_103
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CU*AACG
- Length
- 6 nucleotides
- Bulged bases
- 9SRA|1|1|A|2804, 9SRA|1|1|C|2805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_103 not in the Motif Atlas
- Homologous match to IL_4V9F_088
- Geometric discrepancy: 0.0951
- The information below is about IL_4V9F_088
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
9SRA|1|1|C|2744
9SRA|1|1|U|2745
*
9SRA|1|1|A|2803
9SRA|1|1|A|2804
9SRA|1|1|C|2805
9SRA|1|1|G|2806
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BI
- Large ribosomal subunit protein uL13
- Chain BJ
- Large ribosomal subunit protein uL14
- Chain H
- Dehydrogenase
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