IL_9SRA_104

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

9SRA|1|1|A|2774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_104 not in the Motif Atlas

Homologous match to IL_4V9F_089

Geometric discrepancy: 0.1041

The information below is about IL_4V9F_089

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

9SRA|1|1|U|2754
9SRA|1|1|G|2755
*
9SRA|1|1|C|2772
9SRA|1|1|A|2773
9SRA|1|1|A|2774
9SRA|1|1|G|2775

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BI

Large ribosomal subunit protein uL13