IL_9SRA_168

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

9SRA|1|3|A|4

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_168 not in the Motif Atlas

Geometric match to IL_4WF9_002

Geometric discrepancy: 0.1968

The information below is about IL_4WF9_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9SRA|1|3|C|3
9SRA|1|3|A|4
9SRA|1|3|C|5
*
9SRA|1|3|G|121
9SRA|1|3|G|122

Current chains

Chain 3

rRNA 5S

Nearby chains

Chain BO

Large ribosomal subunit protein uL18