IL_9SRB_092

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCGCAGCGUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRB_092 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.1625

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

9SRB|1|1|G|2350
9SRB|1|1|C|2351
9SRB|1|1|G|2352
9SRB|1|1|C|2353
9SRB|1|1|A|2354
9SRB|1|1|G|2355
9SRB|1|1|C|2356
9SRB|1|1|G|2357
9SRB|1|1|U|2358
9SRB|1|1|A|2359
9SRB|1|1|G|2360
*
9SRB|1|1|C|2418
9SRB|1|1|C|2419

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BA

Large ribosomal subunit protein uL1

Chain H

Dehydrogenase