IL_9SRB_093
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGAG*CGUCCAUGAGACAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRB_093 not in the Motif Atlas
- Geometric match to IL_3U4M_003
- Geometric discrepancy: 0.2569
- The information below is about IL_3U4M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
9SRB|1|1|G|2364
9SRB|1|1|G|2365
9SRB|1|1|A|2366
9SRB|1|1|G|2367
*
9SRB|1|1|C|2401
9SRB|1|1|G|2402
9SRB|1|1|U|2403
9SRB|1|1|C|2404
9SRB|1|1|C|2405
9SRB|1|1|A|2406
9SRB|1|1|U|2407
9SRB|1|1|G|2408
9SRB|1|1|A|2409
9SRB|1|1|G|2410
9SRB|1|1|A|2411
9SRB|1|1|C|2412
9SRB|1|1|A|2413
9SRB|1|1|C|2414
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BA
- Large ribosomal subunit protein uL1
- Chain H
- Dehydrogenase
Coloring options: