IL_9SRC_001
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CGAG*(4AC)GAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRC_001 not in the Motif Atlas
- Geometric match to IL_9E6Q_100
- Geometric discrepancy: 0.1083
- The information below is about IL_9E6Q_100
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
9SRC|1|1|C|1
9SRC|1|1|G|2
9SRC|1|1|A|3
9SRC|1|1|G|4
*
9SRC|1|1|4AC|91
9SRC|1|1|G|92
9SRC|1|1|A|93
9SRC|1|1|G|94
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BS
- Large ribosomal subunit protein uL22
Coloring options: