IL_9SRC_011
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GCGAG*(4AC)GUCGAAC
- Length
- 13 nucleotides
- Bulged bases
- 9SRC|1|1|C|214
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRC_011 not in the Motif Atlas
- Homologous match to IL_4V9F_004
- Geometric discrepancy: 0.2145
- The information below is about IL_4V9F_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9SRC|1|1|G|195
9SRC|1|1|C|196
9SRC|1|1|G|197
9SRC|1|1|A|198
9SRC|1|1|G|199
*
9SRC|1|1|4AC|211
9SRC|1|1|G|212
9SRC|1|1|U|213
9SRC|1|1|C|214
9SRC|1|1|G|215
9SRC|1|1|A|216
9SRC|1|1|A|217
9SRC|1|1|C|218
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BU
- Large ribosomal subunit protein uL24
- Chain BW
- Large ribosomal subunit protein uL29
Coloring options: