IL_9SRC_071
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GGGAGUG*CGAGAAC
- Length
- 14 nucleotides
- Bulged bases
- 9SRC|1|1|U|1762, 9SRC|1|1|A|1775
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRC_071 not in the Motif Atlas
- Homologous match to IL_4V9F_058
- Geometric discrepancy: 0.3828
- The information below is about IL_4V9F_058
- Detailed Annotation
- Kink-turn
- Broad Annotation
- Kink-turn
- Motif group
- IL_32016.1
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
9SRC|1|1|G|1757
9SRC|1|1|G|1758
9SRC|1|1|G|1759
9SRC|1|1|A|1760
9SRC|1|1|G|1761
9SRC|1|1|U|1762
9SRC|1|1|G|1763
*
9SRC|1|1|C|1773
9SRC|1|1|G|1774
9SRC|1|1|A|1775
9SRC|1|1|G|1776
9SRC|1|1|A|1777
9SRC|1|1|A|1778
9SRC|1|1|C|1779
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain AQ
- 30S ribosomal protein S15
- Chain B5
- Large ribosomal subunit protein eL14
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain BZ
- Large ribosomal subunit protein eL30
- Chain Bd
- Large ribosomal subunit protein eL34
- Chain Bi
- Large ribosomal subunit protein eL43
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