IL_9SRC_092

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRC_092 not in the Motif Atlas

Geometric match to IL_8B0X_049

Geometric discrepancy: 0.2924

The information below is about IL_8B0X_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

9SRC|1|1|G|2348
9SRC|1|1|U|2349
9SRC|1|1|G|2350
*
9SRC|1|1|C|2419
9SRC|1|1|A|2420
9SRC|1|1|C|2421

Current chains

Chain 1

rRNA 23S

Nearby chains