IL_9SRC_096

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CCGGCC*GUCGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRC_096 not in the Motif Atlas

Geometric match to IL_8GLP_029

Geometric discrepancy: 0.3865

The information below is about IL_8GLP_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.3

Basepair signature

cWW-L-R-L-R-L-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9SRC|1|1|C|2378
9SRC|1|1|C|2379
9SRC|1|1|G|2380
9SRC|1|1|G|2381
9SRC|1|1|C|2382
9SRC|1|1|C|2383
*
9SRC|1|1|G|2389
9SRC|1|1|U|2390
9SRC|1|1|C|2391
9SRC|1|1|G|2392
9SRC|1|1|G|2393

Current chains

Chain 1

rRNA 23S

Nearby chains