IL_9SRC_106

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

9SRC|1|1|A|2804, 9SRC|1|1|C|2805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRC_106 not in the Motif Atlas

Homologous match to IL_4V9F_088

Geometric discrepancy: 0.0957

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

9SRC|1|1|C|2744
9SRC|1|1|U|2745
*
9SRC|1|1|A|2803
9SRC|1|1|A|2804
9SRC|1|1|C|2805
9SRC|1|1|G|2806

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BI

Large ribosomal subunit protein uL13

Chain BJ

Large ribosomal subunit protein uL14

Chain H

Dehydrogenase