IL_9SRD_005

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAG*(4AC)GAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_005 not in the Motif Atlas

Geometric match to IL_3DIL_002

Geometric discrepancy: 0.167

The information below is about IL_3DIL_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

9SRD|1|1|G|49
9SRD|1|1|A|50
9SRD|1|1|A|51
9SRD|1|1|G|52
*
9SRD|1|1|4AC|60
9SRD|1|1|G|61
9SRD|1|1|A|62
9SRD|1|1|C|63

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain AJ

30S ribosomal protein S8e

Chain BQ

Large ribosomal subunit protein eL19

Chain BV

Large ribosomal subunit protein eL24