IL_9SRD_006

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

9SRD|1|1|U|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_006 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2291

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9SRD|1|1|G|100
9SRD|1|1|U|101
9SRD|1|1|C|102
*
9SRD|1|1|G|117
9SRD|1|1|U|118
9SRD|1|1|C|119

Current chains

Chain 1

rRNA 23S

Nearby chains