IL_9SRD_011

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCGAG*(4AC)GUCGAAC

Length

13 nucleotides

Bulged bases

9SRD|1|1|C|214

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_011 not in the Motif Atlas

Homologous match to IL_4V9F_004

Geometric discrepancy: 0.2035

The information below is about IL_4V9F_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

9SRD|1|1|G|195
9SRD|1|1|C|196
9SRD|1|1|G|197
9SRD|1|1|A|198
9SRD|1|1|G|199
*
9SRD|1|1|4AC|211
9SRD|1|1|G|212
9SRD|1|1|U|213
9SRD|1|1|C|214
9SRD|1|1|G|215
9SRD|1|1|A|216
9SRD|1|1|A|217
9SRD|1|1|C|218

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BU

Large ribosomal subunit protein uL24

Chain BW

Large ribosomal subunit protein uL29