IL_9SRD_018

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9SRD|1|1|A|522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_018 not in the Motif Atlas

Geometric match to IL_9H3G_126

Geometric discrepancy: 0.3163

The information below is about IL_9H3G_126

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9SRD|1|1|G|421
9SRD|1|1|C|422
*
9SRD|1|1|G|521
9SRD|1|1|A|522
9SRD|1|1|C|523

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BG

50S ribosomal protein L7Ae

Chain Bk

C2H2-type domain-containing protein