IL_9SRD_040

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGGAG*CGUAGAUG

Length

13 nucleotides

Bulged bases

9SRD|1|1|A|1185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_040 not in the Motif Atlas

Geometric match to IL_9E6Q_034

Geometric discrepancy: 0.1219

The information below is about IL_9E6Q_034

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9SRD|1|1|C|1094
9SRD|1|1|G|1095
9SRD|1|1|G|1096
9SRD|1|1|A|1097
9SRD|1|1|G|1098
*
9SRD|1|1|C|1182
9SRD|1|1|G|1183
9SRD|1|1|U|1184
9SRD|1|1|A|1185
9SRD|1|1|G|1186
9SRD|1|1|A|1187
9SRD|1|1|U|1188
9SRD|1|1|G|1189

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BP

Large ribosomal subunit protein eL18

Chain BR

Large ribosomal subunit protein eL21

Chain BY

Large ribosomal subunit protein uL30