IL_9SRD_043

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_043 not in the Motif Atlas

Homologous match to IL_4V9F_034

Geometric discrepancy: 0.0508

The information below is about IL_4V9F_034

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9SRD|1|1|G|1114
9SRD|1|1|A|1115
*
9SRD|1|1|U|1165
9SRD|1|1|C|1166
9SRD|1|1|C|1167

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain BN

Large ribosomal subunit protein uL16

Chain BO

Large ribosomal subunit protein uL18

Chain BR

Large ribosomal subunit protein eL21