IL_9SRD_046

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_046 not in the Motif Atlas

Geometric match to IL_5LYS_006

Geometric discrepancy: 0.1785

The information below is about IL_5LYS_006

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9SRD|1|1|U|1130
9SRD|1|1|G|1131
9SRD|1|1|C|1132
*
9SRD|1|1|G|1150
9SRD|1|1|G|1151

Current chains

Chain 1

rRNA 23S

Nearby chains