IL_9SRD_052

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9SRD|1|1|U|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_052 not in the Motif Atlas

Homologous match to IL_4V9F_039

Geometric discrepancy: 0.1295

The information below is about IL_4V9F_039

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9SRD|1|1|G|1261
9SRD|1|1|U|1262
9SRD|1|1|G|1263
*
9SRD|1|1|C|1404
9SRD|1|1|C|1405

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BI

Large ribosomal subunit protein uL13

Chain BY

Large ribosomal subunit protein uL30

Chain Bc

Large ribosomal subunit protein eL33

Chain Bl

Large ribosomal subunit protein eL20