IL_9SRD_058
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CGU*AUCG
- Length
- 7 nucleotides
- Bulged bases
- 9SRD|1|1|U|1506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRD_058 not in the Motif Atlas
- Homologous match to IL_4V9F_046
- Geometric discrepancy: 0.1401
- The information below is about IL_4V9F_046
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_84227.1
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9SRD|1|1|C|1455
9SRD|1|1|G|1456
9SRD|1|1|U|1457
*
9SRD|1|1|A|1505
9SRD|1|1|U|1506
9SRD|1|1|C|1507
9SRD|1|1|G|1508
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain B6
- 30S ribosomal protein S24e
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BL
- Large ribosomal subunit protein uL15
- Chain Bb
- Large ribosomal subunit protein eL32
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