IL_9SRD_059

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGUAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9SRD|1|1|A|1469

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_059 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.0987

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9SRD|1|1|C|1466
9SRD|1|1|G|1467
9SRD|1|1|U|1468
9SRD|1|1|A|1469
9SRD|1|1|G|1470
9SRD|1|1|A|1471
9SRD|1|1|A|1472
9SRD|1|1|G|1473
*
9SRD|1|1|U|1492
9SRD|1|1|G|1493
9SRD|1|1|G|1494
9SRD|1|1|A|1495
9SRD|1|1|G|1496

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain Bb

Large ribosomal subunit protein eL32