IL_9SRD_061

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_061 not in the Motif Atlas

Geometric match to IL_9E6Q_052

Geometric discrepancy: 0.0633

The information below is about IL_9E6Q_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74641.4

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

9SRD|1|1|G|1569
9SRD|1|1|G|1570
9SRD|1|1|U|1571
9SRD|1|1|U|1572
*
9SRD|1|1|A|1876
9SRD|1|1|C|1877

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BT

Large ribosomal subunit protein uL23

Chain Bd

Large ribosomal subunit protein eL34

Chain Be

Large ribosomal subunit protein eL37

Chain Bf

Large ribosomal subunit protein eL39