IL_9SRD_066

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUAG*CGAUC

Length

9 nucleotides

Bulged bases

9SRD|1|1|U|1862

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_066 not in the Motif Atlas

Geometric match to IL_2ZY6_001

Geometric discrepancy: 0.1443

The information below is about IL_2ZY6_001

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9SRD|1|1|G|1674
9SRD|1|1|U|1675
9SRD|1|1|A|1676
9SRD|1|1|G|1677
*
9SRD|1|1|C|1859
9SRD|1|1|G|1860
9SRD|1|1|A|1861
9SRD|1|1|U|1862
9SRD|1|1|C|1863

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain Bd

Large ribosomal subunit protein eL34