IL_9SRD_067

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUAG*CGAUC

Length

9 nucleotides

Bulged bases

9SRD|1|1|U|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_067 not in the Motif Atlas

Geometric match to IL_9E6Q_057

Geometric discrepancy: 0.0709

The information below is about IL_9E6Q_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9SRD|1|1|G|1714
9SRD|1|1|U|1715
9SRD|1|1|A|1716
9SRD|1|1|G|1717
*
9SRD|1|1|C|1822
9SRD|1|1|G|1823
9SRD|1|1|A|1824
9SRD|1|1|U|1825
9SRD|1|1|C|1826

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain Bd

Large ribosomal subunit protein eL34