IL_9SRD_086

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AAG*CUAU

Length

7 nucleotides

Bulged bases

9SRD|1|1|A|2295, 9SRD|1|1|U|2845, 9SRD|1|1|A|2846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_086 not in the Motif Atlas

Homologous match to IL_4V9F_073

Geometric discrepancy: 0.1948

The information below is about IL_4V9F_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

9

Unit IDs

9SRD|1|1|A|2294
9SRD|1|1|A|2295
9SRD|1|1|G|2296
*
9SRD|1|1|C|2844
9SRD|1|1|U|2845
9SRD|1|1|A|2846
9SRD|1|1|U|2847

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BS

Large ribosomal subunit protein uL22