IL_9SRD_093

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CCGGCC*GUCGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_093 not in the Motif Atlas

Geometric match to IL_8GLP_029

Geometric discrepancy: 0.394

The information below is about IL_8GLP_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.3

Basepair signature

cWW-L-R-L-R-L-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9SRD|1|1|C|2378
9SRD|1|1|C|2379
9SRD|1|1|G|2380
9SRD|1|1|G|2381
9SRD|1|1|C|2382
9SRD|1|1|C|2383
*
9SRD|1|1|G|2389
9SRD|1|1|U|2390
9SRD|1|1|C|2391
9SRD|1|1|G|2392
9SRD|1|1|G|2393

Current chains

Chain 1

rRNA 23S

Nearby chains