IL_9SRD_168

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9SRD|1|3|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_168 not in the Motif Atlas

Homologous match to IL_4V9F_101

Geometric discrepancy: 0.0814

The information below is about IL_4V9F_101

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9SRD|1|3|C|17
9SRD|1|3|G|18
*
9SRD|1|3|C|65
9SRD|1|3|A|66
9SRD|1|3|G|67

Current chains

Chain 3

rRNA 5S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain BE

Large ribosomal subunit protein uL5

Chain BO

Large ribosomal subunit protein uL18