IL_9SRE_004

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

UGUAAG*CUUAG

Length

11 nucleotides

Bulged bases

9SRE|1|1|U|69

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRE_004 not in the Motif Atlas

Geometric match to IL_9PN5_129

Geometric discrepancy: 0.0641

The information below is about IL_9PN5_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.3

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

9SRE|1|1|U|40
9SRE|1|1|G|41
9SRE|1|1|U|42
9SRE|1|1|A|43
9SRE|1|1|A|44
9SRE|1|1|G|45
*
9SRE|1|1|C|67
9SRE|1|1|U|68
9SRE|1|1|U|69
9SRE|1|1|A|70
9SRE|1|1|G|71

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BV

Large ribosomal subunit protein eL24