IL_9SRE_027
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GGAAAC*GGAGUAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_027 not in the Motif Atlas
- Geometric match to IL_9E6Q_022
- Geometric discrepancy: 0.1119
- The information below is about IL_9E6Q_022
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9SRE|1|1|G|717
9SRE|1|1|G|718
9SRE|1|1|A|719
9SRE|1|1|A|720
9SRE|1|1|A|721
9SRE|1|1|C|722
*
9SRE|1|1|G|735
9SRE|1|1|G|736
9SRE|1|1|A|737
9SRE|1|1|G|738
9SRE|1|1|U|739
9SRE|1|1|A|740
9SRE|1|1|C|741
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BY
- Large ribosomal subunit protein uL30
- Chain Bc
- Large ribosomal subunit protein eL33
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