IL_9E6Q_022
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GGAAAC*GGAGUAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E6Q_022 not in the Motif Atlas
- Geometric match to IL_4V9F_092
- Geometric discrepancy: 0.1338
- The information below is about IL_4V9F_092
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9E6Q|1|1|G|592
9E6Q|1|1|G|593
9E6Q|1|1|A|594
9E6Q|1|1|A|595
9E6Q|1|1|A|596
9E6Q|1|1|C|597
*
9E6Q|1|1|G|610
9E6Q|1|1|G|611
9E6Q|1|1|A|612
9E6Q|1|1|G|613
9E6Q|1|1|U|614
9E6Q|1|1|A|615
9E6Q|1|1|C|616
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AK
- eL14
- Chain AY
- Large ribosomal subunit protein uL30
- Chain Aj
- DJ-1/PfpI domain-containing protein
Coloring options: