IL_9SRE_040
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- CGGAG*CGUAGAUG
- Length
- 13 nucleotides
- Bulged bases
- 9SRE|1|1|A|1185
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_040 not in the Motif Atlas
- Geometric match to IL_9E6Q_034
- Geometric discrepancy: 0.1195
- The information below is about IL_9E6Q_034
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.3
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
9SRE|1|1|C|1094
9SRE|1|1|G|1095
9SRE|1|1|G|1096
9SRE|1|1|A|1097
9SRE|1|1|G|1098
*
9SRE|1|1|C|1182
9SRE|1|1|G|1183
9SRE|1|1|U|1184
9SRE|1|1|A|1185
9SRE|1|1|G|1186
9SRE|1|1|A|1187
9SRE|1|1|U|1188
9SRE|1|1|G|1189
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BP
- Large ribosomal subunit protein eL18
- Chain BR
- Large ribosomal subunit protein eL21
- Chain BY
- Large ribosomal subunit protein uL30
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