IL_9SRE_053
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- CUAAGUG*CUCAAG
- Length
- 13 nucleotides
- Bulged bases
- 9SRE|1|1|C|1396, 9SRE|1|1|A|1398
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_053 not in the Motif Atlas
- Homologous match to IL_4V9F_040
- Geometric discrepancy: 0.0922
- The information below is about IL_4V9F_040
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
9SRE|1|1|C|1268
9SRE|1|1|U|1269
9SRE|1|1|A|1270
9SRE|1|1|A|1271
9SRE|1|1|G|1272
9SRE|1|1|U|1273
9SRE|1|1|G|1274
*
9SRE|1|1|C|1394
9SRE|1|1|U|1395
9SRE|1|1|C|1396
9SRE|1|1|A|1397
9SRE|1|1|A|1398
9SRE|1|1|G|1399
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- Large ribosomal subunit protein uL6
- Chain BI
- Large ribosomal subunit protein uL13
- Chain BK
- Large ribosomal subunit protein eL14
- Chain Bl
- Large ribosomal subunit protein eL20
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