IL_9SRE_056

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GUAG*CAUC

Length

8 nucleotides

Bulged bases

9SRE|1|1|A|1316

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRE_056 not in the Motif Atlas

Homologous match to IL_5D8H_002

Geometric discrepancy: 0.3582

The information below is about IL_5D8H_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9SRE|1|1|G|1314
9SRE|1|1|U|1315
9SRE|1|1|A|1316
9SRE|1|1|G|1317
*
9SRE|1|1|C|1331
9SRE|1|1|A|1332
9SRE|1|1|U|1333
9SRE|1|1|C|1334

Current chains

Chain 1

rRNA 23S

Nearby chains