IL_9SRE_059
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- CGUAGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 9SRE|1|1|A|1469
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_059 not in the Motif Atlas
- Homologous match to IL_4V9F_048
- Geometric discrepancy: 0.1014
- The information below is about IL_4V9F_048
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.3
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
9SRE|1|1|C|1466
9SRE|1|1|G|1467
9SRE|1|1|U|1468
9SRE|1|1|A|1469
9SRE|1|1|G|1470
9SRE|1|1|A|1471
9SRE|1|1|A|1472
9SRE|1|1|G|1473
*
9SRE|1|1|U|1492
9SRE|1|1|G|1493
9SRE|1|1|G|1494
9SRE|1|1|A|1495
9SRE|1|1|G|1496
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BS
- Large ribosomal subunit protein uL22
- Chain BU
- Large ribosomal subunit protein uL24
- Chain Bb
- Large ribosomal subunit protein eL32
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