IL_9SRE_064
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- CUAAC*GGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 9SRE|1|1|A|1640, 9SRE|1|1|A|1641
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_064 not in the Motif Atlas
- Geometric match to IL_9AXU_060
- Geometric discrepancy: 0.0627
- The information below is about IL_9AXU_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.3
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
9SRE|1|1|C|1610
9SRE|1|1|U|1611
9SRE|1|1|A|1612
9SRE|1|1|A|1613
9SRE|1|1|C|1614
*
9SRE|1|1|G|1637
9SRE|1|1|G|1638
9SRE|1|1|A|1639
9SRE|1|1|A|1640
9SRE|1|1|A|1641
9SRE|1|1|G|1642
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain Bd
- Large ribosomal subunit protein eL34
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bf
- Large ribosomal subunit protein eL39
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